Dataset type
This dataset that contains primary occurrence data for species.
Description
16S occurrence data from the Linnaeus Marine Observatory (LMO) 2011-2023.
This dataset was published via the SBDI ASV portal.
Geographic Description
Lat: 56.9309 Long: 17.0607
Methods
The samples from the LMO timeseries are continuously processed and were sequenced over the course of 13 years in different sequencing batches. Therefore, raw reads were processed with the nf-core/ampliseq pipeline (v2.11.0-g0473e15, Nextflow: 24.04.4 (Straub et al., 2020)) for each Illumina run separately. The nf-core/ampliseq pipeline is based on DADA2 (v. 1.30.0; (Callahan et al., 2016)) which uses an error correction algorithm for Illumina amplicon reads to produce amplicon sequence variants (ASVs). The pipeline was run with default settings except for forward and reverse trimming lengths which were set to 259 and 199 respectively. We taxonomically annotated the full dataset using SBDI-GTDB (v. R09-RS220; (Parks et al., 2018; Lundin and Andersson, 2024)) and SILVA (v. 138.2) (Quast et al., 2012) respectively.
Type of content
Includes: Point occurrence data.Citation
Bunse C, Pinhassi J, Lundin D, Farnelid H, Lindehoff E (2026). LMO 16S rRNA metabarcoding dataset. Version 1.0. Linnaeus University. Occurrence dataset. https://www.gbif.se/ipt/resource?r=lmo_2011-2023_16s&v=1.0
Rights
This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
Digitised records
Looking up... the number of records that can be accessed through the Swedish Biodiversity Data Infrastructure. This resource was last checked for updated data on 03 Sep 2026. The most recent data was published on 02 Sep 2026.
Metadata last updated on 2026-09-03 13:34:32.0
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Licence
Creative Commons Attribution (International) 4.0
