Dataset type
This dataset that contains primary occurrence data for species.
Description
Project OverviewThe project aims to investigate species diversity and variety from a citizen science perspective (more of a random character, i.e., not a strictly scientific research character).Project GoalsInvestigate species diversity and variety on a larger scale (>1,000 samples)Give sequences a "face" = metadata such as environmental data, field images, etc.Provide tools for species identificationUse DNA barcoding of the ITS regionBe cost-effectiveBe methodologically feasible from fruiting body to analyzed sequenceDisseminate knowledge about the methodDataset DescriptionThe dataset contains DNA-barcoded samples of fungal fruiting bodies collected in Sweden. The collection has been mostly random and the selection has primarily been based on the collector's own interest. Collectors are mainly amateur mycologists. Barcoding has been performed on the ITS region and parts of the SSU and LSU regions. Additional observational metadata such as coordinates, images, and environmental descriptions are linked to the Swedish Observation System for each respective sample.This dataset was published via the SBDI ASV portal.
Geographic Description
Sweden
Methods
Step 1: From collection of fruitbodies to a barcoded sequence https://www.protocols.io/view/uppsala-fungal-barcoding-using-ont-dna-extraction-n2bvj3mbblk5/v1
Step 2: Bioinformatics. Raw reads to consensus sequencies https://github.com/Rosling-lab/ont_barcoding
Step 3: Consensus sequencies analysis and database reporting
Comming article xxxxx
Databases: Swedish Speicies Observation System (Artportalen), GenBank, ENA, ASV
Type of content
Includes: Point occurrence data.Citation
Fritzson P, Bråvander B (2025). Fungal Diversity Survey Sweden ITS-LSU rDNA. Version 1.1. Biology Section, Uppsala University. Occurrence dataset. https://www.gbif.se/ipt/resource?r=fdss_its-lsu&v=1.1
Rights
To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
Digitised records
Looking up... the number of records that can be accessed through the Swedish Biodiversity Data Infrastructure. This resource was last checked for updated data on 18 Aug 2025. The most recent data was published on 03 Apr 2025.
Metadata last updated on 2025-08-18 06:56:06.0
Loading...
Licence
Creative Commons Zero 1.0
