CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Sweden

Dataset type

This dataset that contains primary occurrence data for species.

Description

Amplicon Sequence Variants of 418bp of CO1 from mild lysed arthropod community samples collected with Malaise traps from the Insect Biome Atlas project in Sweden, as described in the IBA data paper. This dataset was published via the SBDI ASV portal, and has been updated from 'Metadata only' to 'Occurrence' type. Occurrence data were compiled from the following IBA Figshare items: Processed ASV data from the Insect Biome Atlas Project v3: cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gzspikeins_tax_SE.tsv.gz Amplicon sequence variants from the Insect Biome Atlas project v6: co1_asv_counts_se.tsv.gzco1_asv_seqs_se.fasta.gz The following samples were excluded from this resource due to sequencing failure: P23412_1633, P23412_1638, P23412_1641, P23412_1647; or lack of non-zero counts for annotated ASVs: P20863_1580, P23412_1318, P25061_1224, P25061_1440, P25061_1463, P25061_1711, P25061_1734, P25259_1134, P25259_1250.

Geographic Description

Sweden

Methods

See 'Malaise trap samples' and 'Mild lysis' extraction in https://doi.org/10.1101/2024.10.24.619818.

Type of content

Includes: Point occurrence data.

Citation

Miraldo A, Sundh J, Iwaszkiewicz-Eggebrecht E, Granqvist E, Manoharan L, Łukasik P, Tack A J M, Andersson A F, Roslin T, Ronquist F (2025). CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Sweden. Version 1.1. Swedish Museum of Natural History. Occurrence dataset. https://www.gbif.se/ipt/resource?r=iba_co1_lysate_2019_se&v=1.1

Rights

This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

Digitised records

Metadata last updated on 2025-04-24 06:35:25.0