Global soil organisms
GBIF Repatriated
Dataset type
This dataset that contains primary occurrence data for species.
Description
Global distribution of soil organisms. Data deposited in this project represent unique (non-clustered) sequences. These sequences are members of the curated OTU list (tag-jump filtered and chimera-free, clustered at 98% similarity threshold) from the GSMc dataset (Tedersoo et al., Fungal Diversity, 2021, https://doi.org/10.1007/s13225-021-00493-7). For each OTU in each sample, within-OTU sequences were dereplicated ignoring terminal gaps; in the presence of sequence variants differing only in the length of homopolymeric regions, only the most abundant variant was preserved. Taxonomic annotation was transferred from the representative sequence of each OTU to all unique sequences clustered in it. The current dataset includes additional soil samples not covered by the published article (Tedersoo et al., Fungal Diversity, 2021). Additional samples were collected following a slightly different sampling protocol. Taxon occurrences originating from these samples can be filtered out by Dataset name ('Global soil samples subproject (sequences from additional samples)') and Dataset ID (108273). The number of distinct sampling sites: 3 736, sampling events: 4 514. The number of unique taxa based on UNITE species hypotheses on 1.5% distance threshold: 292 413.
Type of content
Includes: Point occurrence data, gbif import.Citation
PlutoF. Global soil organisms. Occurrence dataset https://doi.org/10.15468/fdpeaw accessed via GBIF.org on 2024-09-16.
Digitised records
Looking up... the number of records that can be accessed through the Swedish Biodiversity Data Infrastructure. This resource was last checked for updated data on 16 Sep 2024. The most recent data was published on 27 Feb 2023.
Metadata last updated on 2024-09-16 14:22:36.0
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Licence
Creative Commons Zero 1.0
